EpiSearch: Mapping of Conformational Epitopes

Reference: Negi, S.S. and Braun, W. Automated Detection of Conformational Epitopes using Phage Display Peptide Sequences. Bioinform. Biol. Insights, 3, 71-81, 2009. Download PDF file

Please type or paste your peptide sequences in the following order. CQMWAPQWGPDC CKLYWADGELTC CKLYWADGEFTC CVDYHYEGTITC CVDYHYEGAITC Help : How to use EpiSearch Enter your project name: Use one word e.g TestEp Email Address: For information purpose only Patch Size (A): 10 for 7mer, 12 for 12mer Areacutoff (A^2): Default is 10.0 Accuracy cutoff: Allowed mismatch, 1 to n-2. Default is 3. Select your PDB File:

Help: 1) Please use only one chain in input PDB file. Do not upload a protein complex.
          2) Please use only word name for PDB file like ABCD123456XYZ.pdb
             

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Welcome to EpiSearch

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Example output from EpiSearch WebServer.