BCEP: B-cell Epitope Prediction Server

B-cell Epitope Prediction Server (BCEP)

Prediction of B-cell epitopes using antigen 3D structure. For prediction purpose, please use a monomer structure, select patch size and solvent accessible surface area threshold. You can use standard PDB id or one word for your pdbfile name.

Project name:
Patch size threshold:
Patch score threshold:
Email Address:
Upload your PDB file:
(Do not upload a protein complex, use monomer)
Specify PDB chain ID: PDB chain A-Z,a-z,0-9 or white space.
Prediction Method:

Help: Please do not upload a protein complex, use only one chain. For patch size from 8A to 15A, default value of patch score threshold is 95.0 . All results are printed based on the X% of the highest patch score on the antigen surface. In case of error please send an e-mail to ssnegi AT utmb.edu

Example input from B-cell Epitope Prediction Server:

Example output from B-cell Epitope Prediction Server:

Disclaimer: This service is provided freely to the scientific community for the purpose of scientific research. There is no warranty for the service, either expressed or implied. The entire risk as to the quality and performance of the service is with the user. In no event will Sealy Center for Structural Biology be liable for any damages, including any general, special or consequential damages arising out of the use, misuse, or inability to use of this service.

This website is developed, designed (based on scsb template) and maintained by surendra s negi, The University of Texas Medical Branch, 301 University Blv, Galveston, TX, 77555. Last updated on 13th Jan, 2023