SARS-CoV-2 Mutation Index Server

Reference: Negi, S.S., Schein C.H., and Braun, W., Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis Scientific Reports. 12, Article number: 1128 (2022) Pubmed 



Use one word e.g TestEp
For info purpose only


(Please note: Only top 100 clusters will be used for the analysis)

  • Use following format for the reference sequence.
    Number after > will be used to tag reference sequence.
    >QHR63260.2 (----SPACE---) sequence description
  • Example fasta file:
  • Example output from webserver:
  • This website is developed, designed and maintained by surendra s negi, The University of Texas Medical Branch, 301 University Blv, Galveston, TX, 77555. Last updated on July 13th 2021.

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