Conformational Epitope Prediction Server

EpiSearch: Mapping of Conformational Epitopes

References:

Negi, S.S. and Braun, W., Automated Detection of Conformational Epitopes using Phage Display Peptide Sequences. Bioinform. Biol. Insights, 3, 71-81, 2009. Download PDF file
Listed as most viewed article in la-press.com

Please type or paste your phage display peptides in the following order:
CQMWAPQWGPDC
CKLYWADGELTC
CKLYWADGEFTC
CVDYHYEGTITC
CVDYHYEGAITC
Help : How to use EpiSearch

Enter project name: Use one word e.g TestEp
Email Address: For information purpose only
Patch Size (A): 10 for 7mer, 12 for 12mer
Area cutoff : Default is 10.0, minimum value 5.0
Accuracy cutoff: Allowed mismatch, 1 to n-2. Default is 3
Upload your PDB file:
(Do not upload a protein complex, use monomer)

Help:
Use Monomer only. Do not upload a protein complex

Use only word name for PDB file e.g ABCD123456XYZ.pdb

Number of Visitors

Welcome to EpiSearch

Example output from EpiSearch WebServer.

Disclaimer:

This service is provided freely to the scientific community for the purpose of scientific research. There is no warranty for the service, either expressed or implied. The entire risk as to the quality and performance of the service is with the user. In no event will Sealy Center for Structural Biology be liable for any damages, including any general, special or consequential damages arising out of the use, misuse, or inability to use this service.

This website is developed, designed and maintained by surendra s negi, The University of Texas Medical Branch, 301 University Blv, Galveston, TX, 77555. Last updated on 5th Jan 2014.